R/opt_diff.r
calc_diff.Rd
Distance metric is used to calculate the mean distance between the true plot and all the null plots in a lineup. The difference between the mean distance of the true plot and the maximum mean distance of the null plots is calculated.
calc_diff(lineup.dat, var, met, pos, dist.arg = NULL, m = 20)
lineup.dat | lineup data to get the lineup |
---|---|
var | a vector of names of the variables to be used to calculate the difference |
met | distance metric needed to calculate the distance as a character |
pos | position of the true plot in the lineup |
dist.arg | a list or vector of inputs for the distance metric met; NULL by default |
m | number of plots in the lineup, by default m = 20 |
difference between the mean distance of the true plot and the maximum mean distance of the null plots
if(require('dplyr')){ lineup.dat <- lineup(null_permute('mpg'), mtcars, pos = 1) calc_diff(lineup.dat, var = c('mpg', 'wt'), met = 'bin_dist', dist.arg = list(lineup.dat = lineup.dat, X.bin = 5, Y.bin = 5), pos = 1, m = 8)}#> [1] 0.5797487if(require('dplyr')){ calc_diff(lineup(null_permute('mpg'), mtcars, pos = 1), var = c('mpg', 'wt'), met = 'reg_dist', dist.arg = NULL, pos = 1, m = 8)}#> [1] 0.8177229